PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03315.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 350aa    MW: 39615.7 Da    PI: 5.0328
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03315.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd++l d++++ G g+W++ ++  g+ R++k+c++rw +yl
       KHN03315.1 14 KGRWTAEEDKILTDYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding54.13.6e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E+e++v++++ lG++ W+ Ia +++ gRt++++k++w+++l
       KHN03315.1  67 RGNITPQEEEIIVKLHAVLGNR-WSVIAGHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.558961IPR017930Myb domain
SuperFamilySSF466891.8E-2811108IPR009057Homeodomain-like
SMARTSM007173.4E-121363IPR001005SANT/Myb domain
PfamPF002499.9E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-211568IPR009057Homeodomain-like
CDDcd001674.56E-91661No hitNo description
PROSITE profilePS5129425.57362116IPR017930Myb domain
SMARTSM007172.9E-1666114IPR001005SANT/Myb domain
PfamPF002499.4E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2569116IPR009057Homeodomain-like
CDDcd001671.04E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDKILTDYIQ ENGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDVKRGNI TPQEEEIIVK LHAVLGNRWS VIAGHLPGRT DNEIKNYWNS HLRRKIYCFM  120
KSLNESLPPI DMAAVNVAAN SKRRTGGRGT KTQQTIQEDK NVAYNTSQVP QVQPTLKRSA  180
TSQSFINDEE NPTEYSLDGY CENTYGTTAS CLSSMDEVEA LGPYQWLDDE IMKLTHMFEN  240
GVLVNQGGVL TNNEEWLSRN YDCGLMGANN EESKSGVWSS SNAESGEWNT TSCSSVNSVY  300
DYHHHQWPDM QLEGSVDQSY NPWDFCEENQ NEANCFWGTT GHNEGNGFYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5737342e-69AB573734.1 Lupinus albus LaMYB11 mRNA for R2R3-MYB transcription factor, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003550551.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A0B2P2420.0A0A0B2P242_GLYSO; Transcription factor MYB12
TrEMBLK7MJQ10.0K7MJQ1_SOYBN; Uncharacterized protein
STRINGGLYMA17G03480.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.18e-76myb domain protein 111
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]